skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Search for: All records

Creators/Authors contains: "Yi, Bo"

Note: When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher. Some full text articles may not yet be available without a charge during the embargo (administrative interval).
What is a DOI Number?

Some links on this page may take you to non-federal websites. Their policies may differ from this site.

  1. Free, publicly-accessible full text available May 1, 2026
  2. Free, publicly-accessible full text available March 5, 2026
  3. This dataset presents spatiotemporal dynamics of phosphorus (P) fertilizer management (application rate, timing, and method) at a 4km × 4 km resolution in agricultural land of the contiguous U.S. from 1850 to 2022. By harmonizing multiple data sources, we reconstructed the county-level crop-specific P fertilizer use history. We then spatialized and resampled P fertilizer use data to 4 km × 4 km gridded maps based on historical U.S. cropland distribution and crop type database developed by Ye et al. (2024). This dataset contains (1) P fertilizer total consumption and mean application rate at the national level (Tabular); (2) P fertilizer consumption of 11 crops at the state level (Tabular); (3) P fertilizer consumption of permanent pasture (Tabular); (4) P fertilizer consumption of non-farm at the state level (Tabular); (5) P fertilizer application rate of 11 crop types at the state level (Tabular); (6) P fertilizer application rate of 11 crop types at the county level (Tabular); (7) P fertilizer application timing ratio at the state level (Tabular); (8) P fertilizer application method ratio at the state level (Tabular); (9) Gridded maps of P fertilizer application rate based on state-level data; (10) and (11) Gridded maps of P fertilizer application rate based on county-level data; (12)-(20) Gridded maps of P fertilizer application rate for each crop. A detailed description of the data development processes, key findings, and uncertainties can be found in Cao, P., Yi, B., Bilotto, F., Gonzalez Fischer, C., Herrero, M., Lu, C.: Crop-specific Management History of Phosphorus fertilizer input (CMH-P) in the croplands of United States: Reconciliation of top-down and bottom-up data sources, is under review for the journal Earth System Science Data (ESSD). https://essd.copernicus.org/preprints/essd-2024-67/#discussion.  This work is supported by the Iowa Nutrient Research Center, the ISU College of Liberal Arts and Sciences Dean's Faculty Fellowship, and NSF CAREER grant (1945036). 
    more » « less
  4. Abstract Heterotrophic plants are among the most recalcitrant from a systematics perspective because of reduced morphological and genomic features, and often extreme substitution rate heterogeneity. The orchid subtribe Calypsoinae exemplifies this, containing several lineages that have lost leaves and photosynthesis. In particular, relationships of the leafy Asian Oreorchis and the leafless American Corallorhiza have been contentious. Here we used nuclear sequence capture to resolve relationships within Calypsoinae and addressed the monophyly of Corallorhiza and Oreorchis, for which previous studies have highlighted conflicting patterns of monophyly or paraphyly, depending on the data analysed. Nuclear analyses provided strong support for a monophyletic Corallorhiza and paraphyletic Oreorchis, the latter with two strongly supported clades. As in previous studies, plastid analyses recovered strongly supported paraphyletic assemblages for both genera. Topology tests using plastid and nuclear relationships and data rejected the constrained topologies, further revealing strong cytonuclear conflict. Network-based analyses revealed a lack of evidence for hybridization, suggesting incomplete lineage sorting associated with biological and historical factors have driven intergenomic conflict. Additionally, we found that loci identified as putatively lost in holomycotrophic Corallorhiza species are functionally enriched for organellar functions. The study provides a strong case for the resurrection of Kitigorchis as the sister of Corallorhiza, with two species, Kitigorchis erythrochrysea and Kitigorchis indica, and highlights the challenges associated with phylogenetics of lineages containing mycoheterotrophs. 
    more » « less
  5. The hadron mass can be obtained through the calculation of the trace of the energy-momentum tensor in the hadron which includes the trace anomaly and sigma terms. The anomaly due to conformal symmetry breaking is believed to be an important ingredient for hadron mass generation and confinement. In this work, we will present the calculation of the glue part of the trace anomaly form factors of the pion up to Q 2 4.3 GeV 2 and the nucleon up to Q 2 1 GeV 2 . The calculations are performed on a domain wall fermion ensemble with overlap valence quarks at seven valence pion masses varying from 250 to 540 MeV , including the unitary point 340 MeV . We calculate the radius of the glue trace anomaly for the pion and the nucleon from the z expansion. By performing a two-dimensional Fourier transform on the glue trace anomaly form factors in the infinite momentum frame with no energy transfer, we also obtain their spatial distributions for several valence quark masses. The results are qualitatively extrapolated to the physical valence pion mass with systematic errors from the unphysical sea quark mass, discretization effects in the renormalization sum rule, and finite-volume effects to be addressed in the future. We find the pion’s form factor changes sign, as does its spatial distribution, for light quark masses. This explains how the trace anomaly contribution to the pion mass approaches zero toward the chiral limit. Published by the American Physical Society2024 
    more » « less
  6. ABSTRACT An increase in atmospheric pO2 has been proposed as a trigger for the Cambrian Explosion at ∼539–514 Ma but the mechanistic linkage remains unclear. To gain insights into marine habitability for the Cambrian Explosion, we analysed excess Ba contents (Baexcess) and isotope compositions (δ138Baexcess) of ∼521-Myr-old metalliferous black shales in South China. The δ138Baexcess values vary within a large range and show a negative logarithmic correlation with Baexcess, suggesting a major (>99%) drawdown of oceanic Ba inventory via barite precipitation. Spatial variations in Baexcess and δ138Baexcess indicate that Ba removal was driven by sulfate availability that was ultimately derived from the upwelling of deep seawaters. Global oceanic oxygenation across the Ediacaran–Cambrian transition may have increased the sulfate reservoir via oxidation of sulfide and concurrently decreased the Ba reservoir by barite precipitation. The removal of both H2S and Ba that are deleterious to animals could have improved marine habitability for early animals. 
    more » « less
  7. Abstract. Understanding and assessing the spatiotemporal patterns in crop-specific phosphorus (P) fertilizer management are crucial for enhancing crop yield and mitigating environmental problems. The existing P fertilizer dataset, derived from sales data, depicts an average application rate over total cropland at the county level but overlooks cross-crop variations. Conversely, the survey-based dataset offers crop-specific application details at the state level yet lacks inter-state variability. By reconciling these two datasets, we developed long-term gridded maps to characterize crop-specific P fertilizer application rates, timing, and methods across the contiguous US at a resolution of 4 km × 4 km from 1850 to 2022. We found that P fertilizer application rate over fertilized areas in the US increased from 0.9 g P m−2 yr−1 in 1940 to 1.9 g P m−2 yr−1 in 2022, with substantial variations among crops. However, approximately 40 % of cropland nationwide has remained unfertilized in the recent decade. The hotspots for P fertilizer use have shifted from the southeastern and eastern US to the Midwest and the Great Plains over the past century, reflecting changes in cropland area, crop choices, and P fertilizer use across different crops. Pre-planting (fall and spring) and broadcast application are prevalent among corn, soybean, and cotton in the Midwest and the Southeast, indicating a high P loss risk in these regions. In contrast, wheat and barley in the Great Plains receive the most intensive P fertilization at planting and via non-broadcast application. The P fertilizer management dataset developed in this study can advance our comprehension of agricultural P budgets and facilitate the refinement of best P fertilizer management practices to optimize crop yield and to reduce P loss. Datasets are available at https://doi.org/10.5281/zenodo.10700821 (Cao et al., 2024). 
    more » « less
  8. Abstract Increasing food and biofuel demands have led to the cascading effects from cropland expansions, raised fertilizer use, to increased riverine nitrogen (N) loads. However, little is known about the current trade-off between riverine N pollution and crop production due to the lack of predictive understanding of ecological processes across the land-aquatic continuum. Here, we propose a riverine N footprint (RNF) concept to quantify how N loads change along with per unit crop production gain. Using data synthesis and a well-calibrated hydro-ecological model, we find that the RNF within the Mississippi–Atchafalaya River Basin peaked at 1.95 g N kg−1grain during the 1990s, and then shifted from an increasing to a decreasing trend, reaching 0.65 g N kg−1grain in the 2010s. This implies decoupled responses of crop production and N loads to key agricultural activities approximately after 2000, but this pattern varies considerably among sub-basins. Our study highlights the importance of developing a food–energy–water nexus indicator to examine the region-specific trade-offs between crop production and land-to-aquatic N loads for achieving nutrient mitigation goals while sustaining economic gains. 
    more » « less
  9. These data support the findings of a manuscript by Lu et al. under review in Environmental Research Letters. We used data synthesis and a well-calibrated hydro-ecological model to quantify the dynamics and controls of the riverine N footprint (RNF) within the Mississippi-Atchafalaya River Basin (MARB) from 1970 to 2019. These supportive data include (1) Annual synthetic N fertilizer and manure N input from 1970 to 2019 in sub-basins in the MARB; (2) Annual N inputs, outputs, and N balance from 1970 to 2017 in the MARB; (3) Changes in crop production, N load and riverine N footprint in response to key agricultural activities in MARB; (4) Changes in crop production, N load, and riverine N footprint under key agricultural activities at sub-basin level; (5) Annual acreage of major grain crops and total cropland areas in sub-basins of the MARB. 
    more » « less
  10. Abstract Lignin is an abundant and complex plant polymer that may limit litter decomposition, yet lignin is sometimes a minor constituent of soil organic carbon (SOC). Accounting for diversity in soil characteristics might reconcile this apparent contradiction. Tracking decomposition of a lignin/litter mixture and SOC across different North American mineral soils using lab and field incubations, here we show that cumulative lignin decomposition varies 18-fold among soils and is strongly correlated with bulk litter decomposition, but not SOC decomposition. Climate legacy predicts decomposition in the lab, and impacts of nitrogen availability are minor compared with geochemical and microbial properties. Lignin decomposition increases with some metals and fungal taxa, whereas SOC decomposition decreases with metals and is weakly related with fungi. Decoupling of lignin and SOC decomposition and their contrasting biogeochemical drivers indicate that lignin is not necessarily a bottleneck for SOC decomposition and can explain variable contributions of lignin to SOC among ecosystems. 
    more » « less